3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05473

Details:

PFam ID : PF05473

PFam Domain Description : UL45 protein

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 89

Average sequence length: 132.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05473	A8WN49_CAEBR_2_145	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05473	O39257_9ALPH_19_218	100

Sequence based PCA Plot of the family - PF05473 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=18
Motif2 Start=15 Length=8
Motif3 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay