3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05472

Details:

PFam ID : PF05472

PFam Domain Description : DNA replication terminus site-binding protein (Ter protein)

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 97

Average sequence length: 271.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05472	A3JI28_9ALTE_64_279	42.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05472	C1MF14_9ENTR_1_291	100

Sequence based PCA Plot of the family - PF05472 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=11
Motif2 Start=16 Length=8
Motif3 Start=7 Length=8
Motif4 Start=268 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay