3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05470

Details:

PFam ID : PF05470

PFam Domain Description : Eukaryotic translation initiation factor 3 subunit 8 N-terminus

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 247

Average sequence length: 362.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05470	F0WWA1_9STRA_1_92	54.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05470	Q23FG1_TETTH_29_557	100

Sequence based PCA Plot of the family - PF05470 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay