3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05465

Details:

PFam ID : PF05465

PFam Domain Description : Halobacterial gas vesicle protein C (GVPC) repeat

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 37

Average sequence length: 31.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05465	A7SFF6_NEMVE_12_189	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05465	O33398_NATVU_236_267	94.4

Sequence based PCA Plot of the family - PF05465 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay