3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05460

Details:

PFam ID : PF05460

PFam Domain Description : Origin recognition complex subunit 6 (ORC6)

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 104

Average sequence length: 249.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05460	B6K075_SCHJY_10_109	60.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05460	D6WSF9_TRICA_2_106	95.1

Sequence based PCA Plot of the family - PF05460 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=190 Length=8
Motif2 Start=65 Length=8
Motif3 Start=39 Length=8
Motif4 Start=396 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay