3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05459

Details:

PFam ID : PF05459

PFam Domain Description : Herpesvirus transcriptional regulator family

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 41

Average sequence length: 198.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05459	Q8JND2_9GAMA_210_431	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05459	IE63_ELHVK_29_294	100

Sequence based PCA Plot of the family - PF05459 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=57 Length=11
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay