3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05458

Details:

PFam ID : PF05458

PFam Domain Description : Cd27 binding protein (Siva)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 47

Average sequence length: 132.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05458	Q5CU93_CRYPV_2_122	61.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05458	Q4RLN8_TETNG_1_169	100

Sequence based PCA Plot of the family - PF05458 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay