3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05456

Details:

PFam ID : PF05456

PFam Domain Description : Eukaryotic translation initiation factor 4E binding protein (EIF4EBP)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 80

Average sequence length: 106.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05456	B9ELD3_SALSA_1_46	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05456	Q5DI71_SCHJA_1_120	100

Sequence based PCA Plot of the family - PF05456 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay