3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05454

Details:

PFam ID : PF05454

PFam Domain Description : Dystroglycan (Dystrophin-associated glycoprotein 1)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 52

Average sequence length: 195.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05454	B3S750_TRIAD_673_790	56

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05454	E9HEH1_DAPPU_653_948	100

Sequence based PCA Plot of the family - PF05454 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=216 Length=8
Motif2 Start=189 Length=8
Motif3 Start=260 Length=8
Motif4 Start=288 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay