3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05453

Details:

PFam ID : PF05453

PFam Domain Description : BmTXKS1/BmP02 toxin family

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 12

Average sequence length: 25.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05453	SCX2_BUTSI_1_28	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05453	SCX2_BUTSI_1_28	90.9

Sequence based PCA Plot of the family - PF05453 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=12 Length=8
Motif2 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay