3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05450

Details:

PFam ID : PF05450

PFam Domain Description : Nicastrin

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 95

Average sequence length: 194.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05450	E9PC09_HUMAN_16_78	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05450	B8C5E5_THAPS_263_534	98.9

Sequence based PCA Plot of the family - PF05450 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=59 Length=8
Motif2 Start=4 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay