3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05448

Details:

PFam ID : PF05448

PFam Domain Description : Acetyl xylan esterase (AXE1)

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 343

Average sequence length: 262.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05448	E4H090_PROAC_1_71	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05448	F0SWU9_SYNGF_1_351	100

Sequence based PCA Plot of the family - PF05448 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=18 Length=8
Motif3 Start=110 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay