3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05440

Details:

PFam ID : PF05440

PFam Domain Description : Tetrahydromethanopterin S-methyltransferase subunit B

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 34

Average sequence length: 93.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05440	MTRB_METKA_2_98	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05440	MTRB_METKA_2_98	100

Sequence based PCA Plot of the family - PF05440 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay