3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05439

Details:

PFam ID : PF05439

PFam Domain Description : Jumping translocation breakpoint protein (JTB)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 38

Average sequence length: 104.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05439	E3X2U8_ANODA_48_138	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05439	E5SH45_TRISP_38_162	100

Sequence based PCA Plot of the family - PF05439 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=1 Length=8
Motif3 Start=17 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay