3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05438

Details:

PFam ID : PF05438

PFam Domain Description : Thyrotropin-releasing hormone (TRH)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 30

Average sequence length: 176.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05438	C3ZWL4_BRAFL_232_363	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05438	TRH_CHICK_5_230	100

Sequence based PCA Plot of the family - PF05438 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=92 Length=8
Motif2 Start=74 Length=8
Motif3 Start=33 Length=8
Motif4 Start=137 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay