3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05436

Details:

PFam ID : PF05436

PFam Domain Description : Mating factor alpha precursor N-terminus

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 15

Average sequence length: 80.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05436	C1BSP0_9MAXI_58_199	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05436	Q754X8_ASHGO_1_93	100

Sequence based PCA Plot of the family - PF05436 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay