3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05433

Details:

PFam ID : PF05433

PFam Domain Description : Glycine zipper 2TM domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 621

Average sequence length: 41.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05433	A1BGH9_CHLPD_175_392	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05433	F1W299_9BURK_1_31	90.4

Sequence based PCA Plot of the family - PF05433 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay