3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05432

Details:

PFam ID : PF05432

PFam Domain Description : Bone sialoprotein II (BSP-II)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 11

Average sequence length: 270.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05432	A1BGH9_CHLPD_175_392	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05432	B3SXQ5_PALPA_17_334	100

Sequence based PCA Plot of the family - PF05432 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=310 Length=8
Motif3 Start=300 Length=8
Motif4 Start=290 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay