3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05428

Details:

PFam ID : PF05428

PFam Domain Description : Corticotropin-releasing factor binding protein (CRF-BP)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 37

Average sequence length: 245.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05428	D6W9E0_TRICA_8_329	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05428	D6W9E0_TRICA_8_329	100

Sequence based PCA Plot of the family - PF05428 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=143 Length=8
Motif2 Start=159 Length=8
Motif3 Start=89 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay