3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05425

Details:

PFam ID : PF05425

PFam Domain Description : Copper resistance protein D

Number of Sequence in 50% Dataset : 182

Number of Sequence in Full Dataset : 635

Average sequence length: 102.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05425	Q8IBW9_PLAF7_1192_1353	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05425	Q0ADQ2_NITEC_195_336	98.2

Sequence based PCA Plot of the family - PF05425 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=18
Motif2 Start=4 Length=8
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay