3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05424

Details:

PFam ID : PF05424

PFam Domain Description : Duffy binding domain

Number of Sequence in 50% Dataset : 154

Number of Sequence in Full Dataset : 4423

Average sequence length: 169.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05424	Q8IBW9_PLAF7_1192_1353	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05424	D3GI66_PLAFA_1_85	99.6

Sequence based PCA Plot of the family - PF05424 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=70 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay