3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05420

Details:

PFam ID : PF05420

PFam Domain Description : Cellulose synthase operon protein C C-terminus (BCSC_C)

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 113

Average sequence length: 329.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05420	A7M792_9PROT_889_1063	90.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05420	E6WVP5_PSEUU_1099_1480	100

Sequence based PCA Plot of the family - PF05420 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=21
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay