3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05419

Details:

PFam ID : PF05419

PFam Domain Description : GUN4-like

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 259

Average sequence length: 130.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05419	A0YXK4_LYNSP_177_217	98.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05419	A0ZFS1_NODSP_706_855	100

Sequence based PCA Plot of the family - PF05419 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=121 Length=8
Motif2 Start=46 Length=8
Motif3 Start=97 Length=8
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay