3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05418

Details:

PFam ID : PF05418

PFam Domain Description : Apovitellenin I (Apo-VLDL-II)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 6

Average sequence length: 60.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05418	E0XL19_HEV_439_524	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05418	APOV1_COTJA_25_105	100

Sequence based PCA Plot of the family - PF05418 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay