3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05415

Details:

PFam ID : PF05415

PFam Domain Description : Beet necrotic yellow vein furovirus-type papain-like endopeptidase

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 77.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05415	Q6TXK5_PRRSV_35_141	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05415	Q9IF44_9VIRU_1287_1390	100

Sequence based PCA Plot of the family - PF05415 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay