3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05414

Details:

PFam ID : PF05414

PFam Domain Description : Viral domain of unknown function (DUF1717)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 70

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05414	Q6TXK5_PRRSV_35_141	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05414	Q65980_9VIRU_636_736	66

Sequence based PCA Plot of the family - PF05414 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay