3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05412

Details:

PFam ID : PF05412

PFam Domain Description : Equine arterivirus Nsp2-type cysteine proteinase

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 21

Average sequence length: 101.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05412	Q6TXK5_PRRSV_35_141	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05412	Q6TXK5_PRRSV_35_141	100

Sequence based PCA Plot of the family - PF05412 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay