3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05409

Details:

PFam ID : PF05409

PFam Domain Description : Coronavirus endopeptidase C30

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 27

Average sequence length: 278.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05409	Q6DTV3_9GAMC_2825_3126	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05409	Q6DTV3_9GAMC_2825_3126	100

Sequence based PCA Plot of the family - PF05409 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=152 Length=8
Motif2 Start=129 Length=8
Motif3 Start=113 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay