3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05408

Details:

PFam ID : PF05408

PFam Domain Description : Foot-and-mouth virus L-proteinase

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 49

Average sequence length: 195.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05408	Q2XP18_9PICO_2_203	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05408	Q2XP18_9PICO_2_203	100

Sequence based PCA Plot of the family - PF05408 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=181 Length=8
Motif3 Start=52 Length=8
Motif4 Start=168 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay