3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05406

Details:

PFam ID : PF05406

PFam Domain Description : WGR domain

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 471

Average sequence length: 78.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05406	B5KDV0_9RHOB_6_88	76.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05406	B5KDV0_9RHOB_6_88	100

Sequence based PCA Plot of the family - PF05406 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=17
Motif2 Start=10 Length=8
Motif3 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay