3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05405

Details:

PFam ID : PF05405

PFam Domain Description : Mitochondrial ATP synthase B chain precursor (ATP-synt_B)

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 171

Average sequence length: 146.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05405	D3W6W8_9CHLO_18_99	19.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05405	F1DPN0_9CHLO_16_181	98.8

Sequence based PCA Plot of the family - PF05405 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay