3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05404

Details:

PFam ID : PF05404

PFam Domain Description : Translocon-associated protein, delta subunit precursor (TRAP-delta)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 57

Average sequence length: 153.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05404	Q56UE4_LYMST_13_102	82.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05404	E9C8U9_9EUKA_3_172	100

Sequence based PCA Plot of the family - PF05404 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay