3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05401

Details:

PFam ID : PF05401

PFam Domain Description : Nodulation protein S (NodS)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 133

Average sequence length: 149.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05401	A8MEX0_ALKOO_38_182	68

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05401	D1ZWI0_SORMK_21_191	100

Sequence based PCA Plot of the family - PF05401 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=139 Length=8
Motif3 Start=48 Length=8
Motif4 Start=106 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay