3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05400

Details:

PFam ID : PF05400

PFam Domain Description : FliW protein

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 231

Average sequence length: 82.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05400	E7SH52_SHIDY_1_40	4.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05400	C0Z6U5_BREBN_21_101	84

Sequence based PCA Plot of the family - PF05400 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay