3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05392

Details:

PFam ID : PF05392

PFam Domain Description : Cytochrome C oxidase chain VIIB

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 26

Average sequence length: 73.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05392	D7NY94_MINSC_1_61	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05392	D7NY94_MINSC_1_61	100

Sequence based PCA Plot of the family - PF05392 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay