3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05390

Details:

PFam ID : PF05390

PFam Domain Description : Yeast cell wall synthesis protein KRE9/KNH1

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 53

Average sequence length: 93.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05390	A3LW49_PICST_167_196	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05390	YBY5_SCHPO_171_266	100

Sequence based PCA Plot of the family - PF05390 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay