3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05389

Details:

PFam ID : PF05389

PFam Domain Description : Negative regulator of genetic competence (MecA)

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 233

Average sequence length: 218.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05389	C0EW31_9FIRM_22_304	86.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05389	B7AX44_9BACE_24_334	100

Sequence based PCA Plot of the family - PF05389 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=38 Length=8
Motif3 Start=1 Length=11
Motif4 Start=244 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay