3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05386

Details:

PFam ID : PF05386

PFam Domain Description : TEP1 N-terminal domain

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 20

Average sequence length: 28.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05386	Q64866_9ADEN_1_109	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05386	E2RH42_CANFA_59_87	100

Sequence based PCA Plot of the family - PF05386 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay