3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05383

Details:

PFam ID : PF05383

PFam Domain Description : La domain

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 446

Average sequence length: 58.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05383	B0WGK8_CULQU_43_72	76.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05383	Q5C2J1_SCHJA_6_81	100

Sequence based PCA Plot of the family - PF05383 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=52 Length=8
Motif2 Start=37 Length=8
Motif3 Start=4 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay