3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05379 Details: PFam ID : PF05379 PFam Domain Description : Carlavirus endopeptidase Number of Sequence in 50% Dataset : 36 Number of Sequence in Full Dataset : 45 Average sequence length: 86.3 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF05379B5TRQ1_9VIRU_978_106591.4 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF05379Q9YP86_9VIRU_131_220100 Sequence based PCA Plot of the family - PF05379 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=20 Length=8Motif2 Start=11 Length=8Motif3 Start=52 Length=8Motif4 Start=2 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF05379
PFam Domain Description : Carlavirus endopeptidase
Number of Sequence in 50% Dataset : 36
Number of Sequence in Full Dataset : 45
Average sequence length: 86.3
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER