Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05379
Details:

PFam ID : PF05379

PFam Domain Description : Carlavirus endopeptidase

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 45

Average sequence length: 86.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF05379B5TRQ1_9VIRU_978_106591.4
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF05379Q9YP86_9VIRU_131_220100
Sequence based PCA Plot of the family - PF05379 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=52 Length=8
Motif4 Start=2 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay