3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05378

Details:

PFam ID : PF05378

PFam Domain Description : Hydantoinase/oxoprolinase N-terminal region

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 1144

Average sequence length: 175.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05378	B5IEG3_ACIB4_62_130	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05378	A3ZX77_9PLAN_5_86	100

Sequence based PCA Plot of the family - PF05378 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=173 Length=8
Motif2 Start=78 Length=8
Motif3 Start=200 Length=14
Motif4 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay