3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05365

Details:

PFam ID : PF05365

PFam Domain Description : Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 120

Average sequence length: 52.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05365	D8U1Z2_VOLCA_5_59	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05365	D8U1Z2_VOLCA_5_59	100

Sequence based PCA Plot of the family - PF05365 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay