3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05362

Details:

PFam ID : PF05362

PFam Domain Description : Lon protease (S16) C-terminal proteolytic domain

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 2211

Average sequence length: 175.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05362	B3SDK2_TRIAD_3_113	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05362	Q4T8U0_TETNG_832_935	99.9

Sequence based PCA Plot of the family - PF05362 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=11
Motif2 Start=9 Length=8
Motif3 Start=40 Length=8
Motif4 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay