3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05360

Details:

PFam ID : PF05360

PFam Domain Description : yiaA/B two helix domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 208

Average sequence length: 52.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05360	C2W3C6_BACCE_1_38	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05360	E7K0R5_SHISO_1_37	91.7

Sequence based PCA Plot of the family - PF05360 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=1 Length=8
Motif3 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay