3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05359

Details:

PFam ID : PF05359

PFam Domain Description : Domain of Unknown Function (DUF748)

Number of Sequence in 50% Dataset : 380

Number of Sequence in Full Dataset : 710

Average sequence length: 149.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05359	A7ZLV9_ECO24_1_73	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05359	E2XY76_PSEFL_2_75	100

Sequence based PCA Plot of the family - PF05359 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay