3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05355

Details:

PFam ID : PF05355

PFam Domain Description : Apolipoprotein C-II

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 18

Average sequence length: 70.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05355	A9UMV1_RAT_20_48	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05355	Q9DG75_ONCMY_38_112	94.1

Sequence based PCA Plot of the family - PF05355 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay