3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05351

Details:

PFam ID : PF05351

PFam Domain Description : GMP-PDE, delta subunit

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 96

Average sequence length: 144.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05351	A2FVK6_TRIVA_12_156	17.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05351	A2FVK6_TRIVA_12_156	100

Sequence based PCA Plot of the family - PF05351 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=42 Length=8
Motif3 Start=98 Length=8
Motif4 Start=84 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay