3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05347

Details:

PFam ID : PF05347

PFam Domain Description : Complex 1 protein (LYR family)

Number of Sequence in 50% Dataset : 154

Number of Sequence in Full Dataset : 799

Average sequence length: 60.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05347	B3RQD4_TRIAD_15_73	75.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05347	Q23QI6_TETTH_5_81	98.7

Sequence based PCA Plot of the family - PF05347 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=23 Length=23
Motif2 Start=5 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay