3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05346

Details:

PFam ID : PF05346

PFam Domain Description : Eukaryotic membrane protein family

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 149

Average sequence length: 300.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05346	D8S9L2_SELML_43_101	76.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05346	Q6CG72_YARLI_118_506	100

Sequence based PCA Plot of the family - PF05346 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=213 Length=8
Motif3 Start=166 Length=8
Motif4 Start=361 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay