3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05343

Details:

PFam ID : PF05343

PFam Domain Description : M42 glutamyl aminopeptidase

Number of Sequence in 50% Dataset : 133

Number of Sequence in Full Dataset : 854

Average sequence length: 279.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05343	E8KLC3_STRSA_618_872	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05343	Q0A7D0_ALHEH_61_369	100

Sequence based PCA Plot of the family - PF05343 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=182 Length=8
Motif2 Start=147 Length=8
Motif3 Start=21 Length=8
Motif4 Start=286 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay